PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30371.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 228aa    MW: 25054.5 Da    PI: 8.4239
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30371.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.74.9e-302103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  KFK30371.1   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISTVPELNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVET 100
                 6*********************9999777889****************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  KFK30371.1 101 VLR 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.3251107IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISTVPELNR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLN  120
FSDQNSQSHH CRFSNSRSKV STTEMEETRV NRKRVKYDRF GSDLDLQLTG STVPVSLLPS  180
PAFCKVANGD RPGSPSEESV TTSCWENGIN GGEKYRTKGD KKLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411876.11e-128hypothetical protein EUTSA_v10026086mg
SwissprotQ9SZE81e-128LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A087GKG91e-170A0A087GKG9_ARAAL; Uncharacterized protein
STRINGAT4G37540.11e-125(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-129LOB domain-containing protein 39